Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Col17a1Q07563 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col17a1Q07563 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col17a1Q07563 Gm7899-201ENSMUST00000192935 1897 ntBASIC19.89■□□□□ 0.77
Col17a1Q07563 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Gm15725-201ENSMUST00000119947 1090 ntBASIC19.89■□□□□ 0.77
Col17a1Q07563 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC19.89■□□□□ 0.77
Col17a1Q07563 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Gm10288-201ENSMUST00000084614 537 ntBASIC19.89■□□□□ 0.77
Col17a1Q07563 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Col17a1Q07563 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col17a1Q07563 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Col17a1Q07563 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC19.88■□□□□ 0.77
Col17a1Q07563 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Col17a1Q07563 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
Col17a1Q07563 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Gm11578-201ENSMUST00000118530 459 ntBASIC19.88■□□□□ 0.77
Col17a1Q07563 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC19.88■□□□□ 0.77
Col17a1Q07563 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC19.88■□□□□ 0.77
Col17a1Q07563 AC154361.2-201ENSMUST00000224747 943 ntBASIC19.88■□□□□ 0.77
Col17a1Q07563 AC154572.1-201ENSMUST00000226098 1204 ntBASIC19.88■□□□□ 0.77
Col17a1Q07563 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Col17a1Q07563 Gm26448-201ENSMUST00000082446 203 ntBASIC19.88■□□□□ 0.77
Col17a1Q07563 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC19.88■□□□□ 0.77
Col17a1Q07563 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Col17a1Q07563 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col17a1Q07563 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Col17a1Q07563 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Efs-202ENSMUST00000227037 2540 ntBASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm37852-201ENSMUST00000193027 350 ntBASIC19.87■□□□□ 0.77
Col17a1Q07563 AC115122.1-201ENSMUST00000224850 1040 ntBASIC19.87■□□□□ 0.77
Col17a1Q07563 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm6992-201ENSMUST00000217973 1607 ntBASIC19.87■□□□□ 0.77
Col17a1Q07563 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Col17a1Q07563 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm6831-202ENSMUST00000213025 1673 ntBASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm6903-201ENSMUST00000160509 1366 ntBASIC19.87■□□□□ 0.77
Col17a1Q07563 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Col17a1Q07563 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col17a1Q07563 Gm12030-201ENSMUST00000121917 223 ntBASIC19.86■□□□□ 0.77
Col17a1Q07563 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col17a1Q07563 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC19.86■□□□□ 0.77
Col17a1Q07563 AC154436.1-201ENSMUST00000227272 782 ntBASIC19.86■□□□□ 0.77
Col17a1Q07563 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col17a1Q07563 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col17a1Q07563 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col17a1Q07563 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col17a1Q07563 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Gm7049-201ENSMUST00000223520 1712 ntBASIC19.86■□□□□ 0.77
Col17a1Q07563 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms