Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
Col8a1Q00780 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
Col8a1Q00780 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Col8a1Q00780 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Mir698-201ENSMUST00000102164 109 ntBASIC11.33□□□□□ -0.6
Col8a1Q00780 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Gm4909-201ENSMUST00000118749 794 ntBASIC11.33□□□□□ -0.6
Col8a1Q00780 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC11.33□□□□□ -0.6
Col8a1Q00780 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.33□□□□□ -0.6
Col8a1Q00780 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 AC162938.1-201ENSMUST00000213140 2323 ntBASIC11.33□□□□□ -0.6
Col8a1Q00780 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 AC115735.4-201ENSMUST00000227460 1944 ntBASIC11.33□□□□□ -0.6
Col8a1Q00780 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col8a1Q00780 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Col8a1Q00780 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Nupl1-207ENSMUST00000225311 2475 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm9755-201ENSMUST00000032981 1356 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm24830-201ENSMUST00000102024 166 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm8805-201ENSMUST00000117848 313 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm13123-201ENSMUST00000122173 492 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm25890-201ENSMUST00000177643 165 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm22614-201ENSMUST00000178300 165 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 CT573086.1-201ENSMUST00000227202 1074 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 CT030704.2-201ENSMUST00000228887 494 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm22042-201ENSMUST00000082989 165 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm26232-201ENSMUST00000083360 166 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm24136-201ENSMUST00000083374 165 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm26110-201ENSMUST00000083971 165 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Carlr-201ENSMUST00000181515 2574 ntBASIC11.32□□□□□ -0.6
Col8a1Q00780 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms