Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox3P53784 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox3P53784 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC12.75□□□□□ -0.37
Sox3P53784 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox3P53784 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox3P53784 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox3P53784 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Sox3P53784 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Sox3P53784 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.74□□□□□ -0.37
Sox3P53784 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Gm2639-201ENSMUST00000156881 1297 ntBASIC12.74□□□□□ -0.37
Sox3P53784 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Sox3P53784 Gm19078-201ENSMUST00000206311 727 ntBASIC12.74□□□□□ -0.37
Sox3P53784 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC12.74□□□□□ -0.37
Sox3P53784 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.74□□□□□ -0.37
Sox3P53784 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Sox3P53784 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sox3P53784 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.73□□□□□ -0.37
Sox3P53784 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Gm37861-201ENSMUST00000193534 2869 ntBASIC12.73□□□□□ -0.37
Sox3P53784 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC12.73□□□□□ -0.37
Sox3P53784 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Mir877-201ENSMUST00000104738 85 ntBASIC12.73□□□□□ -0.37
Sox3P53784 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Sox3P53784 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Gm15240-201ENSMUST00000118156 720 ntBASIC12.73□□□□□ -0.37
Sox3P53784 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.73□□□□□ -0.37
Sox3P53784 Gm13612-201ENSMUST00000119276 390 ntBASIC12.73□□□□□ -0.37
Sox3P53784 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Sox3P53784 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC12.73□□□□□ -0.37
Sox3P53784 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC12.73□□□□□ -0.37
Sox3P53784 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.73□□□□□ -0.37
Sox3P53784 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Gm38002-201ENSMUST00000193255 180 ntBASIC12.73□□□□□ -0.37
Sox3P53784 Gm5276-201ENSMUST00000196683 1047 ntBASIC12.73□□□□□ -0.37
Sox3P53784 Gm43758-201ENSMUST00000199500 367 ntBASIC12.73□□□□□ -0.37
Sox3P53784 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Sox3P53784 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Sox3P53784 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Sox3P53784 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Sox3P53784 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox3P53784 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Sox3P53784 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC12.72□□□□□ -0.37
Sox3P53784 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox3P53784 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sox3P53784 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox3P53784 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Sox3P53784 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox3P53784 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms