Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm12623-201ENSMUST00000119849 1983 ntBASIC17.14■□□□□ 0.33
Col18a1P39061 Gm11801-201ENSMUST00000117807 746 ntBASIC17.14■□□□□ 0.33
Col18a1P39061 Gm13937-201ENSMUST00000121000 988 ntBASIC17.14■□□□□ 0.33
Col18a1P39061 Gm12628-201ENSMUST00000122193 382 ntBASIC17.14■□□□□ 0.33
Col18a1P39061 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC17.14■□□□□ 0.33
Col18a1P39061 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC17.14■□□□□ 0.33
Col18a1P39061 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC17.14■□□□□ 0.33
Col18a1P39061 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col18a1P39061 Gm8100-201ENSMUST00000182906 988 ntBASIC17.14■□□□□ 0.33
Col18a1P39061 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Col18a1P39061 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col18a1P39061 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.14■□□□□ 0.33
Col18a1P39061 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Gm7049-201ENSMUST00000223520 1712 ntBASIC17.13■□□□□ 0.33
Col18a1P39061 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC17.13■□□□□ 0.33
Col18a1P39061 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC17.13■□□□□ 0.33
Col18a1P39061 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC17.13■□□□□ 0.33
Col18a1P39061 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC17.13■□□□□ 0.33
Col18a1P39061 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col18a1P39061 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Gm16071-201ENSMUST00000119589 793 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC17.12■□□□□ 0.33
Col18a1P39061 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Gm17826-201ENSMUST00000189720 798 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col18a1P39061 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Gm45120-201ENSMUST00000208880 408 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Gm4157-201ENSMUST00000211647 679 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 AC122408.1-201ENSMUST00000218949 218 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Mirlet7i-201ENSMUST00000083472 85 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC17.12■□□□□ 0.33
Col18a1P39061 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Col18a1P39061 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col18a1P39061 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Col18a1P39061 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Gm4726-201ENSMUST00000135604 736 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Gm6019-201ENSMUST00000148369 736 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Gm23119-201ENSMUST00000158610 140 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Gm28388-201ENSMUST00000186262 437 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 AC153954.1-201ENSMUST00000216959 255 ntBASIC17.12■□□□□ 0.33
Col18a1P39061 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
Col18a1P39061 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col18a1P39061 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Col18a1P39061 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col18a1P39061 Gm28719-201ENSMUST00000187779 1757 ntBASIC17.11■□□□□ 0.33
Col18a1P39061 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Col18a1P39061 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Gm9025-201ENSMUST00000122415 1575 ntBASIC17.11■□□□□ 0.33
Col18a1P39061 AC113060.1-201ENSMUST00000225689 1573 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms