Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Olfr410-202ENSMUST00000213831 5070 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Tns1-208ENSMUST00000187584 9916 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Tns1-217ENSMUST00000191104 9904 ntAPPRIS P3 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Mgat5-201ENSMUST00000038361 8436 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Gm12892-201ENSMUST00000117367 1146 ntBASIC10.96□□□□□ -0.65
Hmgb3O54879 Gm13884-201ENSMUST00000118103 829 ntBASIC10.96□□□□□ -0.65
Hmgb3O54879 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC10.96□□□□□ -0.65
Hmgb3O54879 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Gm7229-201ENSMUST00000214719 1007 ntBASIC10.96□□□□□ -0.65
Hmgb3O54879 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC10.96□□□□□ -0.65
Hmgb3O54879 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC10.96□□□□□ -0.65
Hmgb3O54879 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hmgb3O54879 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Hmgb3O54879 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Hmgb3O54879 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC10.96□□□□□ -0.66
Hmgb3O54879 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Hmgb3O54879 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC10.96□□□□□ -0.66
Hmgb3O54879 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC10.96□□□□□ -0.66
Hmgb3O54879 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Hmgb3O54879 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Hmgb3O54879 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Setbp1-201ENSMUST00000025430 9953 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Sall2-201ENSMUST00000058326 5147 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Rpph1-201ENSMUST00000175096 319 ntBASIC10.95□□□□□ -0.66
Hmgb3O54879 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm18027-201ENSMUST00000218947 619 ntBASIC10.95□□□□□ -0.66
Hmgb3O54879 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hmgb3O54879 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Hmgb3O54879 Gm32742-201ENSMUST00000210433 8516 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 131.3 ms