Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Gm7862-201ENSMUST00000121461 292 ntBASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Gm27301-201ENSMUST00000184012 127 ntBASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Matn2-203ENSMUST00000226766 3252 ntBASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
RTRAFQ9CQE8 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gm38385-201ENSMUST00000194454 2351 ntBASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gm15483-201ENSMUST00000120338 456 ntBASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gm10060-201ENSMUST00000212002 111 ntBASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Rnf17-202ENSMUST00000223627 2077 ntBASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 AC127597.1-201ENSMUST00000225697 5711 ntBASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RTRAFQ9CQE8 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Gm27920-201ENSMUST00000183953 96 ntBASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
RTRAFQ9CQE8 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms