Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Mir686-201ENSMUST00000102174 109 ntBASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 AC134254.1-201ENSMUST00000221362 167 ntBASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sf3b1Q99NB9 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Sf3b1Q99NB9 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sf3b1Q99NB9 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Sf3b1Q99NB9 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Sf3b1Q99NB9 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Sf3b1Q99NB9 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sf3b1Q99NB9 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sf3b1Q99NB9 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Gm6447-201ENSMUST00000118905 835 ntBASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Gm37008-201ENSMUST00000195712 319 ntBASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.08□□□□□ -0.16
Sf3b1Q99NB9 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sf3b1Q99NB9 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms