Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC12.15□□□□□ -0.46
Lims1Q99JW4 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lims1Q99JW4 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Lims1Q99JW4 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lims1Q99JW4 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lims1Q99JW4 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lims1Q99JW4 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lims1Q99JW4 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lims1Q99JW4 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.15□□□□□ -0.47
Lims1Q99JW4 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lims1Q99JW4 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.14□□□□□ -0.47
Lims1Q99JW4 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.14□□□□□ -0.47
Lims1Q99JW4 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lims1Q99JW4 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC12.13□□□□□ -0.47
Lims1Q99JW4 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.13□□□□□ -0.47
Lims1Q99JW4 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Lims1Q99JW4 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.13□□□□□ -0.47
Lims1Q99JW4 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Gm17795-201ENSMUST00000214505 757 ntBASIC12.13□□□□□ -0.47
Lims1Q99JW4 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Gm13127-201ENSMUST00000118978 1389 ntBASIC12.13□□□□□ -0.47
Lims1Q99JW4 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lims1Q99JW4 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.12□□□□□ -0.47
Lims1Q99JW4 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.12□□□□□ -0.47
Lims1Q99JW4 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lims1Q99JW4 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.12□□□□□ -0.47
Lims1Q99JW4 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms