Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clrn3Q8BHH8 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clrn3Q8BHH8 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clrn3Q8BHH8 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clrn3Q8BHH8 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clrn3Q8BHH8 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.54□□□□□ -0.4
Clrn3Q8BHH8 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm17330-201ENSMUST00000221047 165 ntBASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Pcgf5-211ENSMUST00000225920 6443 ntBASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Clrn3Q8BHH8 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Clrn3Q8BHH8 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Gm11524-201ENSMUST00000119349 807 ntBASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Gm42612-201ENSMUST00000197986 623 ntBASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Gm43170-201ENSMUST00000199827 612 ntBASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Gm24447-201ENSMUST00000083977 338 ntBASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clrn3Q8BHH8 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Clrn3Q8BHH8 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Clrn3Q8BHH8 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clrn3Q8BHH8 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clrn3Q8BHH8 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clrn3Q8BHH8 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clrn3Q8BHH8 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clrn3Q8BHH8 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms