Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trim27Q62158 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Trim27Q62158 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim27Q62158 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Trim27Q62158 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Trim27Q62158 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim27Q62158 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC16.31■□□□□ 0.2
Trim27Q62158 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC16.31■□□□□ 0.2
Trim27Q62158 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC16.31■□□□□ 0.2
Trim27Q62158 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Trim27Q62158 AC150560.1-201ENSMUST00000227731 1187 ntBASIC16.31■□□□□ 0.2
Trim27Q62158 AC125117.1-201ENSMUST00000228121 468 ntBASIC16.31■□□□□ 0.2
Trim27Q62158 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Trim27Q62158 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim27Q62158 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Gm44851-201ENSMUST00000205735 2309 ntBASIC16.3■□□□□ 0.2
Trim27Q62158 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim27Q62158 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim27Q62158 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim27Q62158 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim27Q62158 Gm19931-201ENSMUST00000198920 368 ntBASIC16.3■□□□□ 0.2
Trim27Q62158 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 AC122305.4-201ENSMUST00000216159 1206 ntBASIC16.3■□□□□ 0.2
Trim27Q62158 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim27Q62158 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 Gm8798-201ENSMUST00000211877 1661 ntBASIC16.3■□□□□ 0.2
Trim27Q62158 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Trim27Q62158 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim27Q62158 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Trim27Q62158 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC16.29■□□□□ 0.2
Trim27Q62158 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim27Q62158 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim27Q62158 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trim27Q62158 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim27Q62158 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim27Q62158 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC16.29■□□□□ 0.2
Trim27Q62158 AC151895.1-201ENSMUST00000219025 1742 ntBASIC16.29■□□□□ 0.2
Trim27Q62158 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim27Q62158 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim27Q62158 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms