Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Gm25144-201ENSMUST00000179561 110 ntBASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Gm25352-201ENSMUST00000179815 110 ntBASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ptchd3Q0EEE2 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Gm44719-201ENSMUST00000206404 149 ntBASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Ptchd3Q0EEE2 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Gm33320-201ENSMUST00000192232 530 ntBASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ptchd3Q0EEE2 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Ptchd3Q0EEE2 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ptchd3Q0EEE2 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.83□□□□□ -0.35
Ptchd3Q0EEE2 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ptchd3Q0EEE2 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Ptchd3Q0EEE2 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Gm15653-201ENSMUST00000119247 907 ntBASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Gm44344-201ENSMUST00000200287 129 ntBASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms