Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
Sox9Q04887 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
Sox9Q04887 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.71□□□□□ -0.21
Sox9Q04887 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Gm38102-201ENSMUST00000192791 1935 ntBASIC13.71□□□□□ -0.21
Sox9Q04887 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC13.71□□□□□ -0.21
Sox9Q04887 Gm11531-201ENSMUST00000117614 555 ntBASIC13.71□□□□□ -0.21
Sox9Q04887 Gm8566-201ENSMUST00000120174 465 ntBASIC13.71□□□□□ -0.21
Sox9Q04887 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC13.71□□□□□ -0.21
Sox9Q04887 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC13.71□□□□□ -0.21
Sox9Q04887 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.71□□□□□ -0.21
Sox9Q04887 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC13.71□□□□□ -0.21
Sox9Q04887 AC140293.1-201ENSMUST00000225626 1247 ntBASIC13.71□□□□□ -0.21
Sox9Q04887 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sox9Q04887 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Sox9Q04887 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sox9Q04887 Gm9279-201ENSMUST00000223175 1606 ntBASIC13.71□□□□□ -0.22
Sox9Q04887 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.71□□□□□ -0.22
Sox9Q04887 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Sox9Q04887 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
Sox9Q04887 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Sox9Q04887 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Sox9Q04887 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Sox9Q04887 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC13.7□□□□□ -0.22
Sox9Q04887 Selenot-ps-201ENSMUST00000119098 593 ntBASIC13.7□□□□□ -0.22
Sox9Q04887 Gm4760-201ENSMUST00000119663 1030 ntBASIC13.7□□□□□ -0.22
Sox9Q04887 Gm12502-201ENSMUST00000120197 444 ntBASIC13.7□□□□□ -0.22
Sox9Q04887 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Gm9211-201ENSMUST00000182882 975 ntBASIC13.7□□□□□ -0.22
Sox9Q04887 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC13.7□□□□□ -0.22
Sox9Q04887 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 CT025694.1-201ENSMUST00000226188 934 ntBASIC13.7□□□□□ -0.22
Sox9Q04887 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Sox9Q04887 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.7□□□□□ -0.22
Sox9Q04887 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sox9Q04887 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Sox9Q04887 Gm8337-201ENSMUST00000187358 1938 ntBASIC13.69□□□□□ -0.22
Sox9Q04887 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.69□□□□□ -0.22
Sox9Q04887 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
Sox9Q04887 Gm45770-201ENSMUST00000212105 616 ntBASIC13.69□□□□□ -0.22
Sox9Q04887 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Sox9Q04887 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC13.69□□□□□ -0.22
Sox9Q04887 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sox9Q04887 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC13.68□□□□□ -0.22
Sox9Q04887 Gm19221-201ENSMUST00000221827 1477 ntBASIC13.68□□□□□ -0.22
Sox9Q04887 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sox9Q04887 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sox9Q04887 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms