Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm11618-201ENSMUST00000117946 267 ntBASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Mospd4-201ENSMUST00000180618 576 ntBASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm29608-201ENSMUST00000190444 463 ntBASIC14.67□□□□□ -0.06
Col6a1Q04857 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.67□□□□□ -0.06
Col6a1Q04857 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.67□□□□□ -0.06
Col6a1Q04857 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC14.67□□□□□ -0.06
Col6a1Q04857 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.67□□□□□ -0.06
Col6a1Q04857 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.67□□□□□ -0.06
Col6a1Q04857 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14.66□□□□□ -0.06
Col6a1Q04857 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm14263-201ENSMUST00000117955 746 ntBASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm11591-201ENSMUST00000120063 702 ntBASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm15782-201ENSMUST00000121073 445 ntBASIC14.66□□□□□ -0.06
Col6a1Q04857 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm24514-201ENSMUST00000174961 285 ntBASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm38144-201ENSMUST00000192790 465 ntBASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC14.66□□□□□ -0.06
Col6a1Q04857 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Gm38102-201ENSMUST00000192791 1935 ntBASIC14.66□□□□□ -0.06
Col6a1Q04857 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col6a1Q04857 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col6a1Q04857 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
Col6a1Q04857 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
Col6a1Q04857 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC14.65□□□□□ -0.06
Col6a1Q04857 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC14.65□□□□□ -0.06
Col6a1Q04857 Gm24990-201ENSMUST00000157406 323 ntBASIC14.65□□□□□ -0.06
Col6a1Q04857 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
Col6a1Q04857 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col6a1Q04857 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
Col6a1Q04857 Mir5120-201ENSMUST00000175020 78 ntBASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms