Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC12.59□□□□□ -0.39
Cdx2P43241 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC12.59□□□□□ -0.39
Cdx2P43241 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Gm25890-201ENSMUST00000177643 165 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Rnu1b2-201ENSMUST00000178073 165 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Rnu1b1-201ENSMUST00000178250 165 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Gm22614-201ENSMUST00000178300 165 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Gm26956-201ENSMUST00000182176 986 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC12.59□□□□□ -0.39
Cdx2P43241 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC12.59□□□□□ -0.39
Cdx2P43241 Gm32025-201ENSMUST00000217960 307 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.59□□□□□ -0.39
Cdx2P43241 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC12.59□□□□□ -0.39
Cdx2P43241 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Gm22042-201ENSMUST00000082989 165 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Gm26232-201ENSMUST00000083360 166 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Gm24136-201ENSMUST00000083374 165 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Rnu1b6-201ENSMUST00000083839 166 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Gm26110-201ENSMUST00000083971 165 ntBASIC12.59□□□□□ -0.39
Cdx2P43241 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.59□□□□□ -0.39
Cdx2P43241 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cdx2P43241 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Cdx2P43241 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Cdx2P43241 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Gm43273-201ENSMUST00000199649 2594 ntBASIC12.58□□□□□ -0.4
Cdx2P43241 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC12.58□□□□□ -0.4
Cdx2P43241 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.58□□□□□ -0.4
Cdx2P43241 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC12.58□□□□□ -0.4
Cdx2P43241 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.58□□□□□ -0.4
Cdx2P43241 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Cdx2P43241 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC12.58□□□□□ -0.4
Cdx2P43241 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC12.58□□□□□ -0.4
Cdx2P43241 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Cdx2P43241 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Cdx2P43241 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cdx2P43241 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Cdx2P43241 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC12.57□□□□□ -0.4
Cdx2P43241 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Cdx2P43241 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cdx2P43241 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Cdx2P43241 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cdx2P43241 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12.57□□□□□ -0.4
Cdx2P43241 Gm12012-201ENSMUST00000118857 1066 ntBASIC12.57□□□□□ -0.4
Cdx2P43241 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.57□□□□□ -0.4
Cdx2P43241 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Gm31256-201ENSMUST00000194705 506 ntBASIC12.57□□□□□ -0.4
Cdx2P43241 Gm43138-201ENSMUST00000199123 708 ntBASIC12.57□□□□□ -0.4
Cdx2P43241 Gm19963-201ENSMUST00000208413 1255 ntBASIC12.57□□□□□ -0.4
Cdx2P43241 AC135669.1-202ENSMUST00000216742 540 ntBASIC12.57□□□□□ -0.4
Cdx2P43241 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Cdx2P43241 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.57□□□□□ -0.4
Cdx2P43241 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cdx2P43241 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms