Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Gm5863-201ENSMUST00000121760 1008 ntBASIC17.18■□□□□ 0.34
Col18a1P39061 Gm6485-201ENSMUST00000160676 439 ntBASIC17.18■□□□□ 0.34
Col18a1P39061 Mir7677-201ENSMUST00000184226 67 ntBASIC17.18■□□□□ 0.34
Col18a1P39061 Gm9873-201ENSMUST00000063891 1097 ntBASIC17.18■□□□□ 0.34
Col18a1P39061 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC17.18■□□□□ 0.34
Col18a1P39061 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Col18a1P39061 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Col18a1P39061 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC17.18■□□□□ 0.34
Col18a1P39061 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Col18a1P39061 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Col18a1P39061 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC17.17■□□□□ 0.34
Col18a1P39061 Gm11509-201ENSMUST00000117358 325 ntBASIC17.17■□□□□ 0.34
Col18a1P39061 Gm17889-201ENSMUST00000198410 598 ntBASIC17.17■□□□□ 0.34
Col18a1P39061 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
Col18a1P39061 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC17.17■□□□□ 0.34
Col18a1P39061 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC17.17■□□□□ 0.34
Col18a1P39061 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC17.17■□□□□ 0.34
Col18a1P39061 Gm23771-201ENSMUST00000178702 110 ntBASIC17.17■□□□□ 0.34
Col18a1P39061 Gm28324-201ENSMUST00000187913 264 ntBASIC17.17■□□□□ 0.34
Col18a1P39061 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC17.17■□□□□ 0.34
Col18a1P39061 Gm6867-201ENSMUST00000219165 425 ntBASIC17.17■□□□□ 0.34
Col18a1P39061 Prrxl1-205ENSMUST00000228878 723 ntBASIC17.17■□□□□ 0.34
Col18a1P39061 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col18a1P39061 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Col18a1P39061 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC17.16■□□□□ 0.34
Col18a1P39061 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Mir8115-201ENSMUST00000184992 119 ntBASIC17.16■□□□□ 0.34
Col18a1P39061 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC17.16■□□□□ 0.34
Col18a1P39061 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC17.16■□□□□ 0.34
Col18a1P39061 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.16■□□□□ 0.34
Col18a1P39061 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Col18a1P39061 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col18a1P39061 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Col18a1P39061 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Col18a1P39061 Gm15703-201ENSMUST00000120250 880 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC17.15■□□□□ 0.34
Col18a1P39061 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Col18a1P39061 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC17.15■□□□□ 0.34
Col18a1P39061 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Gm37133-201ENSMUST00000192705 1922 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.15■□□□□ 0.34
Col18a1P39061 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC17.15■□□□□ 0.34
Col18a1P39061 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Gm13600-201ENSMUST00000117949 744 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 Gm16166-201ENSMUST00000118291 787 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 Gm14724-201ENSMUST00000118400 537 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 Gm13668-201ENSMUST00000119237 1001 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Col18a1P39061 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC17.15■□□□□ 0.34
Col18a1P39061 Gm9139-201ENSMUST00000218817 700 ntBASIC17.15■□□□□ 0.34
Col18a1P39061 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col18a1P39061 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Col18a1P39061 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col18a1P39061 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms