Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Gm11478-201ENSMUST00000117851 599 ntBASIC12.3□□□□□ -0.44
Cd40lgP27548 Gm11524-201ENSMUST00000119349 807 ntBASIC12.3□□□□□ -0.44
Cd40lgP27548 Gm12341-201ENSMUST00000119724 503 ntBASIC12.3□□□□□ -0.44
Cd40lgP27548 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.3□□□□□ -0.44
Cd40lgP27548 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.3□□□□□ -0.44
Cd40lgP27548 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.3□□□□□ -0.44
Cd40lgP27548 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Cd40lgP27548 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cd40lgP27548 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm30238-201ENSMUST00000195528 2603 ntBASIC12.29□□□□□ -0.44
Cd40lgP27548 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC12.29□□□□□ -0.44
Cd40lgP27548 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm42872-201ENSMUST00000200026 1967 ntBASIC12.29□□□□□ -0.44
Cd40lgP27548 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Cd40lgP27548 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm15371-201ENSMUST00000117057 784 ntBASIC12.29□□□□□ -0.44
Cd40lgP27548 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm5745-201ENSMUST00000183748 313 ntBASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm43094-201ENSMUST00000196549 921 ntBASIC12.29□□□□□ -0.44
Cd40lgP27548 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Cd40lgP27548 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.29□□□□□ -0.44
Cd40lgP27548 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.29□□□□□ -0.44
Cd40lgP27548 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Cd40lgP27548 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cd40lgP27548 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Cd40lgP27548 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cd40lgP27548 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cd40lgP27548 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cd40lgP27548 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Cd40lgP27548 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cd40lgP27548 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cd40lgP27548 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cd40lgP27548 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.28□□□□□ -0.44
Cd40lgP27548 Gm43056-201ENSMUST00000197865 2791 ntBASIC12.28□□□□□ -0.44
Cd40lgP27548 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms