Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Msx1P13297 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Msx1P13297 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC12.71□□□□□ -0.37
Msx1P13297 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Gm5940-201ENSMUST00000117582 1068 ntBASIC12.71□□□□□ -0.37
Msx1P13297 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC12.71□□□□□ -0.37
Msx1P13297 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.71□□□□□ -0.37
Msx1P13297 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.71□□□□□ -0.37
Msx1P13297 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Msx1P13297 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.71□□□□□ -0.37
Msx1P13297 Gm43094-201ENSMUST00000196549 921 ntBASIC12.71□□□□□ -0.37
Msx1P13297 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.71□□□□□ -0.37
Msx1P13297 AC126253.1-201ENSMUST00000227974 824 ntBASIC12.71□□□□□ -0.37
Msx1P13297 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Gm7399-201ENSMUST00000032395 858 ntBASIC12.71□□□□□ -0.37
Msx1P13297 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Msx1P13297 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Msx1P13297 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Msx1P13297 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
Msx1P13297 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Msx1P13297 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Msx1P13297 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Msx1P13297 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Msx1P13297 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Msx1P13297 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Msx1P13297 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Msx1P13297 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.7□□□□□ -0.38
Msx1P13297 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC12.7□□□□□ -0.38
Msx1P13297 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Gm5970-201ENSMUST00000131638 1216 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.7□□□□□ -0.38
Msx1P13297 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.7□□□□□ -0.38
Msx1P13297 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Gm8801-201ENSMUST00000173255 1064 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Mir3102-201ENSMUST00000175555 104 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Gm18827-201ENSMUST00000188341 790 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Gm17790-201ENSMUST00000191545 1228 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Gm37604-201ENSMUST00000191749 1272 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.7□□□□□ -0.38
Msx1P13297 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC12.7□□□□□ -0.38
Msx1P13297 Gm7745-202ENSMUST00000222914 567 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC12.7□□□□□ -0.38
Msx1P13297 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Msx1P13297 AC159649.2-201ENSMUST00000222984 3223 ntBASIC12.69□□□□□ -0.38
Msx1P13297 Gm10729-202ENSMUST00000193403 1375 ntBASIC12.69□□□□□ -0.38
Msx1P13297 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Msx1P13297 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 58.3 ms