Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Gm4081-201ENSMUST00000195287 1838 ntBASIC13.05□□□□□ -0.32
ClppO88696 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC13.05□□□□□ -0.32
ClppO88696 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
ClppO88696 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Mir7085-201ENSMUST00000184353 66 ntBASIC13.05□□□□□ -0.32
ClppO88696 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 AY702102-202ENSMUST00000194651 1173 ntBASIC13.05□□□□□ -0.32
ClppO88696 Gm4971-201ENSMUST00000205991 1108 ntBASIC13.05□□□□□ -0.32
ClppO88696 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
ClppO88696 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Gm44981-201ENSMUST00000205549 1943 ntBASIC13.05□□□□□ -0.32
ClppO88696 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
ClppO88696 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ClppO88696 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.04□□□□□ -0.32
ClppO88696 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
ClppO88696 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ClppO88696 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC13.04□□□□□ -0.32
ClppO88696 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC13.04□□□□□ -0.32
ClppO88696 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.04□□□□□ -0.32
ClppO88696 Gm6983-201ENSMUST00000214912 628 ntBASIC13.04□□□□□ -0.32
ClppO88696 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
ClppO88696 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
ClppO88696 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
ClppO88696 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
ClppO88696 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ClppO88696 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.03□□□□□ -0.32
ClppO88696 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Gm45779-201ENSMUST00000212189 4064 ntBASIC13.03□□□□□ -0.32
ClppO88696 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Gm12928-201ENSMUST00000117115 573 ntBASIC13.03□□□□□ -0.32
ClppO88696 Gm12485-201ENSMUST00000119641 291 ntBASIC13.03□□□□□ -0.32
ClppO88696 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC13.03□□□□□ -0.32
ClppO88696 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
ClppO88696 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC13.03□□□□□ -0.32
ClppO88696 Gm38223-201ENSMUST00000194484 695 ntBASIC13.03□□□□□ -0.32
ClppO88696 Gm44397-201ENSMUST00000195950 113 ntBASIC13.03□□□□□ -0.32
ClppO88696 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC13.03□□□□□ -0.32
ClppO88696 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
ClppO88696 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms