Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm9899-201ENSMUST00000065519 555 ntBASIC12.07□□□□□ -0.48
Lmx1bO88609 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.07□□□□□ -0.48
Lmx1bO88609 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC12.07□□□□□ -0.48
Lmx1bO88609 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Lmx1bO88609 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC12.07□□□□□ -0.48
Lmx1bO88609 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Lmx1bO88609 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Lmx1bO88609 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm18244-201ENSMUST00000219747 1566 ntBASIC12.06□□□□□ -0.48
Lmx1bO88609 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.06□□□□□ -0.48
Lmx1bO88609 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm22331-201ENSMUST00000158066 136 ntBASIC12.06□□□□□ -0.48
Lmx1bO88609 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm8810-201ENSMUST00000172895 754 ntBASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm24196-201ENSMUST00000179161 110 ntBASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm45784-201ENSMUST00000188360 142 ntBASIC12.06□□□□□ -0.48
Lmx1bO88609 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC12.06□□□□□ -0.48
Lmx1bO88609 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lmx1bO88609 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Gm14660-201ENSMUST00000119809 575 ntBASIC12.05□□□□□ -0.48
Lmx1bO88609 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Lmx1bO88609 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC12.05□□□□□ -0.48
Lmx1bO88609 Gm29127-201ENSMUST00000188304 517 ntBASIC12.05□□□□□ -0.48
Lmx1bO88609 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC12.05□□□□□ -0.48
Lmx1bO88609 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.05□□□□□ -0.48
Lmx1bO88609 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.05□□□□□ -0.48
Lmx1bO88609 Gm26315-201ENSMUST00000083890 321 ntBASIC12.05□□□□□ -0.48
Lmx1bO88609 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lmx1bO88609 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 72.9 ms