Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC13.02□□□□□ -0.33
Chd3B1AR17 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Chd3B1AR17 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC13.01□□□□□ -0.33
Chd3B1AR17 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm15198-201ENSMUST00000117283 177 ntBASIC13.01□□□□□ -0.33
Chd3B1AR17 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Chd3B1AR17 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm43818-201ENSMUST00000200605 466 ntBASIC13.01□□□□□ -0.33
Chd3B1AR17 Gm45930-201ENSMUST00000221330 292 ntBASIC13.01□□□□□ -0.33
Chd3B1AR17 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Chd3B1AR17 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chd3B1AR17 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Chd3B1AR17 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC13□□□□□ -0.33
Chd3B1AR17 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC13□□□□□ -0.33
Chd3B1AR17 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Gm26185-201ENSMUST00000157692 266 ntBASIC13□□□□□ -0.33
Chd3B1AR17 Gm18827-201ENSMUST00000188341 790 ntBASIC13□□□□□ -0.33
Chd3B1AR17 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
Chd3B1AR17 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC13□□□□□ -0.33
Chd3B1AR17 AC122305.4-201ENSMUST00000216159 1206 ntBASIC13□□□□□ -0.33
Chd3B1AR17 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Chd3B1AR17 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC13□□□□□ -0.33
Chd3B1AR17 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13□□□□□ -0.33
Chd3B1AR17 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Chd3B1AR17 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC13□□□□□ -0.33
Chd3B1AR17 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC13□□□□□ -0.33
Chd3B1AR17 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC13□□□□□ -0.33
Chd3B1AR17 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC13□□□□□ -0.33
Chd3B1AR17 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chd3B1AR17 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chd3B1AR17 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.99□□□□□ -0.33
Chd3B1AR17 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chd3B1AR17 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chd3B1AR17 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.99□□□□□ -0.33
Chd3B1AR17 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.99□□□□□ -0.33
Chd3B1AR17 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chd3B1AR17 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chd3B1AR17 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Chd3B1AR17 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms