Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Gm37861-201ENSMUST00000193534 2869 ntBASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Gm27194-201ENSMUST00000175753 2936 ntBASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.57□□□□□ -0.4
Trim3Q9R1R2 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Gm45668-201ENSMUST00000211271 493 ntBASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim3Q9R1R2 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Gm14928-201ENSMUST00000120198 477 ntBASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Gm24420-201ENSMUST00000176676 59 ntBASIC12.55□□□□□ -0.4
Trim3Q9R1R2 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim3Q9R1R2 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 85.7 ms