Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Gm17823-201ENSMUST00000217830 1006 ntBASIC14.43□□□□□ -0.1
Trim54Q9ERP3 AC173210.1-201ENSMUST00000222341 1131 ntBASIC14.43□□□□□ -0.1
Trim54Q9ERP3 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC14.43□□□□□ -0.1
Trim54Q9ERP3 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim54Q9ERP3 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Gm13123-201ENSMUST00000122173 492 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Gm7029-201ENSMUST00000173226 450 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 AC154171.1-201ENSMUST00000224610 643 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 AC140406.1-201ENSMUST00000226481 465 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Snora73a-201ENSMUST00000082453 205 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Gm8706-201ENSMUST00000197372 1491 ntBASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim54Q9ERP3 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm8805-201ENSMUST00000117848 313 ntBASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm6447-201ENSMUST00000118905 835 ntBASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm8801-201ENSMUST00000173255 1064 ntBASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm26927-201ENSMUST00000182385 965 ntBASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm27516-201ENSMUST00000184237 98 ntBASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Tyms-ps-201ENSMUST00000219550 915 ntBASIC14.41□□□□□ -0.1
Trim54Q9ERP3 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim54Q9ERP3 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 86.6 ms