Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Gm10710-201ENSMUST00000047876 3971 ntBASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Gm12030-201ENSMUST00000121917 223 ntBASIC17.67■□□□□ 0.42
Scn4aQ9ER60 n-R5s84-201ENSMUST00000122591 109 ntBASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Gm6430-201ENSMUST00000054664 1248 ntBASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Scn4aQ9ER60 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Gm25076-201ENSMUST00000104098 132 ntBASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn4aQ9ER60 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 AC124752.1-201ENSMUST00000222131 776 ntTSL 5 BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Gm13916-201ENSMUST00000117368 628 ntBASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Scn4aQ9ER60 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn4aQ9ER60 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn4aQ9ER60 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn4aQ9ER60 Gm12623-201ENSMUST00000119849 1983 ntBASIC17.64■□□□□ 0.42
Scn4aQ9ER60 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.64■□□□□ 0.42
Scn4aQ9ER60 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Ap3s1-202ENSMUST00000224622 978 ntBASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Gm5455-201ENSMUST00000058710 715 ntBASIC17.64■□□□□ 0.41
Scn4aQ9ER60 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn4aQ9ER60 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm34312-201ENSMUST00000204650 1092 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn4aQ9ER60 Gm37859-201ENSMUST00000195529 2173 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms