Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Gm16296-201ENSMUST00000159905 325 ntBASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Gm23363-201ENSMUST00000175024 79 ntBASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Gm6621-201ENSMUST00000193251 772 ntBASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Gm10176-201ENSMUST00000159707 2264 ntBASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm4857-201ENSMUST00000192718 785 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm24526-201ENSMUST00000082921 158 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm6198-201ENSMUST00000191337 2929 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm12241-201ENSMUST00000118330 726 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm13316-201ENSMUST00000140537 691 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm18916-201ENSMUST00000198264 1246 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm6334-201ENSMUST00000207083 228 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Mir339-201ENSMUST00000083659 96 ntBASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Cpsf1Q9EPU4 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cpsf1Q9EPU4 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Cpsf1Q9EPU4 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Cpsf1Q9EPU4 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Cpsf1Q9EPU4 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Cpsf1Q9EPU4 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cpsf1Q9EPU4 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cpsf1Q9EPU4 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Gm15236-201ENSMUST00000117309 379 ntBASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 CT485787.1-201ENSMUST00000225617 968 ntBASIC18.14■□□□□ 0.49
Cpsf1Q9EPU4 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms