Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Gm33320-201ENSMUST00000192232 530 ntBASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx28Q9CWT6 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 AC238940.1-201ENSMUST00000225106 1858 ntBASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm29741-201ENSMUST00000192667 421 ntBASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm37277-201ENSMUST00000194052 1111 ntBASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm9229-201ENSMUST00000222777 126 ntBASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Ddx28Q9CWT6 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Gm27618-201ENSMUST00000183671 60 ntBASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Gm27680-201ENSMUST00000184192 160 ntBASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ddx28Q9CWT6 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Ddx28Q9CWT6 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms