Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.61□□□□□ -0.39
Use1Q9CQ56 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm27618-201ENSMUST00000183671 60 ntBASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm43703-201ENSMUST00000200523 763 ntBASIC12.61□□□□□ -0.39
Use1Q9CQ56 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Use1Q9CQ56 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm15678-201ENSMUST00000117573 960 ntBASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm27321-201ENSMUST00000185021 205 ntBASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm17837-201ENSMUST00000186435 985 ntBASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm37277-201ENSMUST00000194052 1111 ntBASIC12.6□□□□□ -0.39
Use1Q9CQ56 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.6□□□□□ -0.39
Use1Q9CQ56 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gm43423-201ENSMUST00000198390 2094 ntBASIC12.6□□□□□ -0.39
Use1Q9CQ56 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Use1Q9CQ56 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Use1Q9CQ56 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Use1Q9CQ56 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.59□□□□□ -0.39
Use1Q9CQ56 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Use1Q9CQ56 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
Use1Q9CQ56 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms