Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Gm16202-201ENSMUST00000117532 544 ntBASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Gm43179-201ENSMUST00000198797 275 ntBASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.12□□□□□ -0.15
Sf3b1Q99NB9 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Mir1247-201ENSMUST00000116706 82 ntBASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Gm44069-201ENSMUST00000204898 506 ntBASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 AC154595.3-201ENSMUST00000224579 384 ntBASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Gm10146-201ENSMUST00000072739 309 ntBASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Sf3b1Q99NB9 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm13123-201ENSMUST00000122173 492 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm38002-201ENSMUST00000193255 180 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 CU024892.2-201ENSMUST00000224608 832 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Olfr582-201ENSMUST00000098212 960 ntBASIC14.1□□□□□ -0.15
Sf3b1Q99NB9 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms