Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim56Q80VI1 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim56Q80VI1 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim56Q80VI1 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm16202-201ENSMUST00000117532 544 ntBASIC15.7■□□□□ 0.1
Trim56Q80VI1 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm16177-201ENSMUST00000120728 718 ntBASIC15.7■□□□□ 0.1
Trim56Q80VI1 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm8835-201ENSMUST00000173096 1169 ntBASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm29705-201ENSMUST00000212598 474 ntBASIC15.7■□□□□ 0.1
Trim56Q80VI1 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm43423-201ENSMUST00000198390 2094 ntBASIC15.7■□□□□ 0.1
Trim56Q80VI1 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Gm37691-201ENSMUST00000192147 2573 ntBASIC15.7■□□□□ 0.1
Trim56Q80VI1 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim56Q80VI1 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Gm14127-201ENSMUST00000117906 678 ntBASIC15.69■□□□□ 0.1
Trim56Q80VI1 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Mir7085-201ENSMUST00000184353 66 ntBASIC15.69■□□□□ 0.1
Trim56Q80VI1 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC15.69■□□□□ 0.1
Trim56Q80VI1 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC15.69■□□□□ 0.1
Trim56Q80VI1 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 CT030684.3-201ENSMUST00000227308 2445 ntBASIC15.69■□□□□ 0.1
Trim56Q80VI1 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Gm45684-201ENSMUST00000210244 1571 ntBASIC15.69■□□□□ 0.1
Trim56Q80VI1 Gm18244-201ENSMUST00000219747 1566 ntBASIC15.69■□□□□ 0.1
Trim56Q80VI1 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim56Q80VI1 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm44401-201ENSMUST00000204462 2375 ntBASIC15.68■□□□□ 0.1
Trim56Q80VI1 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm15824-201ENSMUST00000119516 955 ntBASIC15.68■□□□□ 0.1
Trim56Q80VI1 Mir7221-201ENSMUST00000184009 72 ntBASIC15.68■□□□□ 0.1
Trim56Q80VI1 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm38230-201ENSMUST00000193572 1159 ntBASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm37922-201ENSMUST00000195596 455 ntBASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm37497-201ENSMUST00000195830 798 ntBASIC15.68■□□□□ 0.1
Trim56Q80VI1 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms