Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim28Q62318 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim28Q62318 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC17.17■□□□□ 0.34
Trim28Q62318 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC17.17■□□□□ 0.34
Trim28Q62318 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC17.17■□□□□ 0.34
Trim28Q62318 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim28Q62318 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Gm14371-201ENSMUST00000138925 1518 ntBASIC17.16■□□□□ 0.34
Trim28Q62318 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trim28Q62318 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Gm15370-201ENSMUST00000117158 253 ntBASIC17.16■□□□□ 0.34
Trim28Q62318 Gm12241-201ENSMUST00000118330 726 ntBASIC17.16■□□□□ 0.34
Trim28Q62318 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC17.16■□□□□ 0.34
Trim28Q62318 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC17.16■□□□□ 0.34
Trim28Q62318 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Trim28Q62318 Gm38341-201ENSMUST00000195357 515 ntBASIC17.16■□□□□ 0.34
Trim28Q62318 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC17.16■□□□□ 0.34
Trim28Q62318 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trim28Q62318 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Trim28Q62318 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC17.16■□□□□ 0.34
Trim28Q62318 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC17.16■□□□□ 0.34
Trim28Q62318 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trim28Q62318 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trim28Q62318 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim28Q62318 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC17.15■□□□□ 0.34
Trim28Q62318 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Gm13350-201ENSMUST00000120519 479 ntBASIC17.15■□□□□ 0.34
Trim28Q62318 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC17.15■□□□□ 0.34
Trim28Q62318 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Trim28Q62318 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trim28Q62318 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Trim28Q62318 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim28Q62318 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
Trim28Q62318 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Trim28Q62318 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trim28Q62318 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trim28Q62318 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Trim28Q62318 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Trim28Q62318 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
Trim28Q62318 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms