Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Nkx3-1P97436 AC166491.1-201ENSMUST00000227053 2308 ntBASIC11.51□□□□□ -0.57
Nkx3-1P97436 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm26513-201ENSMUST00000181802 2489 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm13123-201ENSMUST00000122173 492 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm25261-201ENSMUST00000157416 134 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm43133-201ENSMUST00000197472 463 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm18935-201ENSMUST00000212692 664 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm12500-202ENSMUST00000186471 2428 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Gm28182-201ENSMUST00000188354 2477 ntBASIC11.5□□□□□ -0.57
Nkx3-1P97436 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Nkx3-1P97436 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Gm13350-201ENSMUST00000120519 479 ntBASIC11.49□□□□□ -0.57
Nkx3-1P97436 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Gm27243-201ENSMUST00000183964 521 ntBASIC11.49□□□□□ -0.57
Nkx3-1P97436 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Gm44364-201ENSMUST00000198368 141 ntBASIC11.49□□□□□ -0.57
Nkx3-1P97436 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Nkx3-1P97436 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC11.49□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms