Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm6652-201ENSMUST00000186414 1070 ntBASIC20.15■□□□□ 0.82
Cux1P53564 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC20.15■□□□□ 0.82
Cux1P53564 Gm37986-201ENSMUST00000193285 383 ntBASIC20.15■□□□□ 0.82
Cux1P53564 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Gm8385-201ENSMUST00000058999 643 ntBASIC20.15■□□□□ 0.82
Cux1P53564 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC20.15■□□□□ 0.82
Cux1P53564 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC20.15■□□□□ 0.82
Cux1P53564 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Gm5846-201ENSMUST00000193146 1414 ntBASIC20.15■□□□□ 0.82
Cux1P53564 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cux1P53564 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cux1P53564 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cux1P53564 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cux1P53564 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Cux1P53564 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Cux1P53564 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 AC123665.1-201ENSMUST00000228204 438 ntBASIC20.14■□□□□ 0.81
Cux1P53564 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Cux1P53564 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Mir339-201ENSMUST00000083659 96 ntBASIC20.14■□□□□ 0.81
Cux1P53564 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Cux1P53564 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC20.14■□□□□ 0.81
Cux1P53564 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cux1P53564 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC20.14■□□□□ 0.81
Cux1P53564 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC20.14■□□□□ 0.81
Cux1P53564 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Cux1P53564 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
Cux1P53564 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC20.13■□□□□ 0.81
Cux1P53564 AC108416.1-202ENSMUST00000228927 1201 ntBASIC20.13■□□□□ 0.81
Cux1P53564 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
Cux1P53564 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cux1P53564 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Cux1P53564 Gm5884-201ENSMUST00000036712 1479 ntBASIC20.13■□□□□ 0.81
Cux1P53564 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Cux1P53564 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Cux1P53564 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC20.12■□□□□ 0.81
Cux1P53564 Gm22902-201ENSMUST00000158488 302 ntBASIC20.12■□□□□ 0.81
Cux1P53564 Gm37666-201ENSMUST00000194110 866 ntBASIC20.12■□□□□ 0.81
Cux1P53564 Gm19931-201ENSMUST00000198920 368 ntBASIC20.12■□□□□ 0.81
Cux1P53564 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC20.12■□□□□ 0.81
Cux1P53564 AC125209.1-201ENSMUST00000225812 766 ntBASIC20.12■□□□□ 0.81
Cux1P53564 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Cux1P53564 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Gm21451-201ENSMUST00000111062 2775 ntBASIC20.12■□□□□ 0.81
Cux1P53564 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 AC126444.1-201ENSMUST00000225938 1768 ntBASIC20.12■□□□□ 0.81
Cux1P53564 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Cux1P53564 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC20.12■□□□□ 0.81
Cux1P53564 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC20.12■□□□□ 0.81
Cux1P53564 Gm24749-201ENSMUST00000157838 343 ntBASIC20.12■□□□□ 0.81
Cux1P53564 Gm26361-201ENSMUST00000158868 186 ntBASIC20.12■□□□□ 0.81
Cux1P53564 AC153974.2-201ENSMUST00000218577 1025 ntBASIC20.12■□□□□ 0.81
Cux1P53564 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC20.12■□□□□ 0.81
Cux1P53564 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cux1P53564 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cux1P53564 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cux1P53564 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cux1P53564 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Cux1P53564 Crry-ps-201ENSMUST00000079090 1309 ntBASIC20.11■□□□□ 0.81
Cux1P53564 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cux1P53564 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cux1P53564 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cux1P53564 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms