Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Col18a1P39061 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Mmp14-206ENSMUST00000225641 3238 ntBASIC17.22■□□□□ 0.35
Col18a1P39061 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col18a1P39061 Gm11451-201ENSMUST00000118946 630 ntBASIC17.22■□□□□ 0.35
Col18a1P39061 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC17.22■□□□□ 0.35
Col18a1P39061 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Mir6998-201ENSMUST00000183343 64 ntBASIC17.22■□□□□ 0.35
Col18a1P39061 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Gm6905-201ENSMUST00000205729 511 ntBASIC17.22■□□□□ 0.35
Col18a1P39061 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Gm807-202ENSMUST00000224929 408 ntBASIC17.22■□□□□ 0.35
Col18a1P39061 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col18a1P39061 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Col18a1P39061 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Col18a1P39061 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC17.21■□□□□ 0.35
Col18a1P39061 Cd63-ps-202ENSMUST00000154992 717 ntBASIC17.21■□□□□ 0.35
Col18a1P39061 Gm5852-201ENSMUST00000194119 1021 ntBASIC17.21■□□□□ 0.35
Col18a1P39061 Gm5542-201ENSMUST00000195485 1089 ntBASIC17.21■□□□□ 0.35
Col18a1P39061 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC17.21■□□□□ 0.35
Col18a1P39061 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Col18a1P39061 Gm44094-201ENSMUST00000204703 2030 ntBASIC17.21■□□□□ 0.35
Col18a1P39061 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col18a1P39061 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col18a1P39061 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC17.21■□□□□ 0.34
Col18a1P39061 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.34
Col18a1P39061 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC17.2■□□□□ 0.34
Col18a1P39061 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Gm5455-201ENSMUST00000058710 715 ntBASIC17.2■□□□□ 0.34
Col18a1P39061 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Col18a1P39061 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC17.2■□□□□ 0.34
Col18a1P39061 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC17.2■□□□□ 0.34
Col18a1P39061 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Col18a1P39061 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.2■□□□□ 0.34
Col18a1P39061 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC17.2■□□□□ 0.34
Col18a1P39061 Gm3332-201ENSMUST00000189337 928 ntBASIC17.2■□□□□ 0.34
Col18a1P39061 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC17.2■□□□□ 0.34
Col18a1P39061 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Gm9132-201ENSMUST00000210182 832 ntBASIC17.2■□□□□ 0.34
Col18a1P39061 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC17.2■□□□□ 0.34
Col18a1P39061 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Col18a1P39061 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col18a1P39061 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC17.2■□□□□ 0.34
Col18a1P39061 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col18a1P39061 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Gm14314-201ENSMUST00000118225 1015 ntBASIC17.19■□□□□ 0.34
Col18a1P39061 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC17.19■□□□□ 0.34
Col18a1P39061 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC17.19■□□□□ 0.34
Col18a1P39061 Gm44552-201ENSMUST00000205458 1247 ntBASIC17.19■□□□□ 0.34
Col18a1P39061 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC17.19■□□□□ 0.34
Col18a1P39061 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col18a1P39061 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col18a1P39061 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms