Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Gm13730-201ENSMUST00000121036 1462 ntBASIC11.01□□□□□ -0.65
Hmgb3O54879 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.01□□□□□ -0.65
Hmgb3O54879 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Gm29741-201ENSMUST00000192667 421 ntBASIC11.01□□□□□ -0.65
Hmgb3O54879 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Gm44608-201ENSMUST00000206827 855 ntBASIC11.01□□□□□ -0.65
Hmgb3O54879 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC11.01□□□□□ -0.65
Hmgb3O54879 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 AC122314.1-201ENSMUST00000223056 2239 ntBASIC11.01□□□□□ -0.65
Hmgb3O54879 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Tiam2-202ENSMUST00000169838 5725 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Hmgb3O54879 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Hmgb3O54879 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Hmgb3O54879 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Hmgb3O54879 Gm3809-201ENSMUST00000180973 1006 ntBASIC11□□□□□ -0.65
Hmgb3O54879 Ighv8-7-201ENSMUST00000194349 297 ntBASIC11□□□□□ -0.65
Hmgb3O54879 Gm17968-201ENSMUST00000194902 784 ntBASIC11□□□□□ -0.65
Hmgb3O54879 AC084391.1-201ENSMUST00000200651 141 ntBASIC11□□□□□ -0.65
Hmgb3O54879 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC11□□□□□ -0.65
Hmgb3O54879 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC11□□□□□ -0.65
Hmgb3O54879 AC139350.3-201ENSMUST00000226151 420 ntBASIC11□□□□□ -0.65
Hmgb3O54879 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Hmgb3O54879 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Hmgb3O54879 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Hmgb3O54879 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Gm4782-201ENSMUST00000168705 2046 ntBASIC10.99□□□□□ -0.65
Hmgb3O54879 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms