Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Chd3B1AR17 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.04□□□□□ -0.32
Chd3B1AR17 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Chd3B1AR17 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
Chd3B1AR17 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Mir3102-201ENSMUST00000175555 104 ntBASIC13.04□□□□□ -0.32
Chd3B1AR17 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
Chd3B1AR17 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Chd3B1AR17 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.04□□□□□ -0.32
Chd3B1AR17 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Chd3B1AR17 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Chd3B1AR17 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Gm37042-201ENSMUST00000193816 581 ntBASIC13.03□□□□□ -0.32
Chd3B1AR17 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 AC154725.1-201ENSMUST00000224826 1961 ntBASIC13.03□□□□□ -0.32
Chd3B1AR17 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Gm11637-201ENSMUST00000120601 592 ntBASIC13.03□□□□□ -0.32
Chd3B1AR17 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Gm5370-201ENSMUST00000187187 574 ntBASIC13.03□□□□□ -0.32
Chd3B1AR17 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC13.03□□□□□ -0.32
Chd3B1AR17 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chd3B1AR17 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.02□□□□□ -0.32
Chd3B1AR17 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Chd3B1AR17 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Chd3B1AR17 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chd3B1AR17 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Gm10327-201ENSMUST00000105222 1002 ntBASIC13.02□□□□□ -0.33
Chd3B1AR17 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Chd3B1AR17 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC13.02□□□□□ -0.33
Chd3B1AR17 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Chd3B1AR17 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.33
Chd3B1AR17 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chd3B1AR17 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms