Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Gm27772-201ENSMUST00000184900 187 ntBASIC12.64□□□□□ -0.39
Use1Q9CQ56 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.64□□□□□ -0.39
Use1Q9CQ56 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Use1Q9CQ56 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Gm22175-201ENSMUST00000175007 78 ntBASIC12.63□□□□□ -0.39
Use1Q9CQ56 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Gm18905-201ENSMUST00000205454 928 ntBASIC12.63□□□□□ -0.39
Use1Q9CQ56 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12.63□□□□□ -0.39
Use1Q9CQ56 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Use1Q9CQ56 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.62□□□□□ -0.39
Use1Q9CQ56 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC12.62□□□□□ -0.39
Use1Q9CQ56 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Gm6888-201ENSMUST00000221983 706 ntBASIC12.62□□□□□ -0.39
Use1Q9CQ56 AC154621.1-201ENSMUST00000226155 1119 ntBASIC12.62□□□□□ -0.39
Use1Q9CQ56 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.62□□□□□ -0.39
Use1Q9CQ56 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Use1Q9CQ56 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms