Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Gm18983-201ENSMUST00000222884 2729 ntBASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC16.03■□□□□ 0.16
Ccdc9Q8VC31 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Gm11452-201ENSMUST00000122376 690 ntBASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Gm6550-201ENSMUST00000187574 993 ntBASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.02■□□□□ 0.16
Ccdc9Q8VC31 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
Ccdc9Q8VC31 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Gm2445-201ENSMUST00000182798 989 ntBASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 AV026068-213ENSMUST00000223675 1171 ntBASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc9Q8VC31 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC16■□□□□ 0.15
Ccdc9Q8VC31 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc9Q8VC31 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms