Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Gm8213-201ENSMUST00000118191 441 ntBASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Mir1982-201ENSMUST00000157368 74 ntBASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 AC173210.1-201ENSMUST00000222341 1131 ntBASIC14.8□□□□□ -0.04
Trim47Q8C0E3 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.8□□□□□ -0.04
Trim47Q8C0E3 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim47Q8C0E3 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm12203-201ENSMUST00000118235 598 ntBASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm15544-201ENSMUST00000118776 1531 ntBASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm12209-201ENSMUST00000120089 596 ntBASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm16177-201ENSMUST00000120728 718 ntBASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm27331-201ENSMUST00000183705 60 ntBASIC14.79□□□□□ -0.04
Trim47Q8C0E3 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Clec4d-201ENSMUST00000032240 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim47Q8C0E3 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Gm18062-201ENSMUST00000208020 547 ntBASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Gm18055-201ENSMUST00000208254 547 ntBASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim47Q8C0E3 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms