Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Gm5279-201ENSMUST00000199575 745 ntBASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clrn3Q8BHH8 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Clrn3Q8BHH8 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Clrn3Q8BHH8 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Mir6977-201ENSMUST00000184960 64 ntBASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Gm7730-201ENSMUST00000212486 454 ntBASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 AC154621.1-201ENSMUST00000226155 1119 ntBASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clrn3Q8BHH8 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Gm25927-201ENSMUST00000175058 117 ntBASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Gm5354-201ENSMUST00000182417 973 ntBASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Gm19220-201ENSMUST00000222682 803 ntBASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clrn3Q8BHH8 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clrn3Q8BHH8 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Clrn3Q8BHH8 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.56□□□□□ -0.4
Clrn3Q8BHH8 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Clrn3Q8BHH8 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Clrn3Q8BHH8 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms