Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC16.39■□□□□ 0.21
Trim27Q62158 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim27Q62158 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trim27Q62158 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC16.39■□□□□ 0.21
Trim27Q62158 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim27Q62158 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.38■□□□□ 0.21
Trim27Q62158 Gm5385-201ENSMUST00000118988 1559 ntBASIC16.38■□□□□ 0.21
Trim27Q62158 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Abhd6-203ENSMUST00000225234 1958 ntBASIC16.38■□□□□ 0.21
Trim27Q62158 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trim27Q62158 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC16.38■□□□□ 0.21
Trim27Q62158 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim27Q62158 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Gm14350-201ENSMUST00000116642 640 ntBASIC16.38■□□□□ 0.21
Trim27Q62158 Gm23984-201ENSMUST00000157139 203 ntBASIC16.38■□□□□ 0.21
Trim27Q62158 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trim27Q62158 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC16.38■□□□□ 0.21
Trim27Q62158 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim27Q62158 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim27Q62158 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Trim27Q62158 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
Trim27Q62158 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Ksr1-207ENSMUST00000226282 5260 ntBASIC16.37■□□□□ 0.21
Trim27Q62158 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Mir874-201ENSMUST00000104769 76 ntBASIC16.37■□□□□ 0.21
Trim27Q62158 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
Trim27Q62158 H2-Pa-201ENSMUST00000182803 626 ntBASIC16.37■□□□□ 0.21
Trim27Q62158 Gm27701-201ENSMUST00000184498 110 ntBASIC16.37■□□□□ 0.21
Trim27Q62158 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Trim27Q62158 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim27Q62158 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim27Q62158 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim27Q62158 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC16.36■□□□□ 0.21
Trim27Q62158 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC16.36■□□□□ 0.21
Trim27Q62158 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC16.36■□□□□ 0.21
Trim27Q62158 Gm12091-201ENSMUST00000146791 830 ntBASIC16.36■□□□□ 0.21
Trim27Q62158 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Gm28911-201ENSMUST00000188837 117 ntBASIC16.36■□□□□ 0.21
Trim27Q62158 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC16.36■□□□□ 0.21
Trim27Q62158 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC16.36■□□□□ 0.21
Trim27Q62158 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC16.36■□□□□ 0.21
Trim27Q62158 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trim27Q62158 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trim27Q62158 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim27Q62158 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Trim27Q62158 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim27Q62158 AL645783.1-201ENSMUST00000221416 1832 ntBASIC16.35■□□□□ 0.21
Trim27Q62158 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim27Q62158 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim27Q62158 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms