Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Gm15467-201ENSMUST00000120582 445 ntBASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Gm5628-201ENSMUST00000222318 1049 ntBASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 AC241621.2-201ENSMUST00000223991 2151 ntBASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 AC124751.1-201ENSMUST00000222716 1408 ntBASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Trim40Q3UWA4 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.5□□□□□ -0.41
Trim40Q3UWA4 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim40Q3UWA4 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim40Q3UWA4 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms