Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Mir698-201ENSMUST00000102164 109 ntBASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gm7488-201ENSMUST00000117148 684 ntBASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gm16215-201ENSMUST00000161990 637 ntBASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col28a1Q2UY11 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Gm27196-201ENSMUST00000184787 2582 ntBASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Gm15487-201ENSMUST00000122373 465 ntBASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Gm44855-201ENSMUST00000205725 362 ntBASIC12.98□□□□□ -0.33
Col28a1Q2UY11 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Gm9063-201ENSMUST00000223299 582 ntBASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col28a1Q2UY11 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 85.5 ms