Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm3765-201ENSMUST00000130985 1447 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col9a1Q05722 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm15036-201ENSMUST00000118880 400 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Mir1901-201ENSMUST00000122616 78 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm18352-201ENSMUST00000189113 902 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm35960-201ENSMUST00000202712 767 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm44061-201ENSMUST00000203962 1195 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm8913-201ENSMUST00000209491 641 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 CT485607.1-201ENSMUST00000216100 85 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm9139-201ENSMUST00000218817 700 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm6722-201ENSMUST00000221586 390 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 AC173482.2-201ENSMUST00000224044 750 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC13.17□□□□□ -0.3
Col9a1Q05722 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Col9a1Q05722 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Col9a1Q05722 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 AC174678.1-201ENSMUST00000228007 2749 ntBASIC13.17□□□□□ -0.3
Col9a1Q05722 Gm42478-201ENSMUST00000199252 1467 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Pla2g5-201ENSMUST00000030524 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm12165-201ENSMUST00000117047 342 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm23673-201ENSMUST00000157474 298 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm4868-201ENSMUST00000164138 789 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm3096-201ENSMUST00000185770 364 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm37024-201ENSMUST00000192224 868 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm44651-201ENSMUST00000207343 372 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col9a1Q05722 AC107638.1-201ENSMUST00000213690 1061 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 AC160966.1-203ENSMUST00000214689 1186 ntTSL 5 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Gm24447-201ENSMUST00000083977 338 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col9a1Q05722 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.16□□□□□ -0.3
Col9a1Q05722 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col9a1Q05722 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col9a1Q05722 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col9a1Q05722 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col9a1Q05722 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col9a1Q05722 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.15□□□□□ -0.3
Col9a1Q05722 Gm20541-201ENSMUST00000173035 1406 ntBASIC13.15□□□□□ -0.3
Col9a1Q05722 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col9a1Q05722 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col9a1Q05722 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col9a1Q05722 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col9a1Q05722 AC133083.1-201ENSMUST00000221736 2209 ntBASIC13.15□□□□□ -0.3
Col9a1Q05722 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col9a1Q05722 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms