Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Lig3P97386 Gm5940-201ENSMUST00000117582 1068 ntBASIC14.61□□□□□ -0.07
Lig3P97386 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Gm27847-201ENSMUST00000183711 107 ntBASIC14.61□□□□□ -0.07
Lig3P97386 Gm27375-201ENSMUST00000183799 107 ntBASIC14.61□□□□□ -0.07
Lig3P97386 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC14.61□□□□□ -0.07
Lig3P97386 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.61□□□□□ -0.07
Lig3P97386 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.61□□□□□ -0.07
Lig3P97386 Gm8463-201ENSMUST00000208573 613 ntBASIC14.61□□□□□ -0.07
Lig3P97386 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC14.61□□□□□ -0.07
Lig3P97386 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Gm7399-201ENSMUST00000032395 858 ntBASIC14.61□□□□□ -0.07
Lig3P97386 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.61□□□□□ -0.07
Lig3P97386 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC14.61□□□□□ -0.07
Lig3P97386 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.61□□□□□ -0.07
Lig3P97386 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.61□□□□□ -0.07
Lig3P97386 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lig3P97386 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.6□□□□□ -0.07
Lig3P97386 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC14.6□□□□□ -0.07
Lig3P97386 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14.6□□□□□ -0.07
Lig3P97386 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC14.6□□□□□ -0.07
Lig3P97386 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC14.6□□□□□ -0.07
Lig3P97386 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC14.6□□□□□ -0.07
Lig3P97386 Gm8652-201ENSMUST00000181363 964 ntBASIC14.6□□□□□ -0.07
Lig3P97386 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Gm6091-201ENSMUST00000098307 165 ntBASIC14.6□□□□□ -0.07
Lig3P97386 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Lig3P97386 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Lig3P97386 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.6□□□□□ -0.07
Lig3P97386 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.6□□□□□ -0.07
Lig3P97386 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lig3P97386 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.6□□□□□ -0.07
Lig3P97386 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Gm9252-201ENSMUST00000172364 1602 ntBASIC14.59□□□□□ -0.07
Lig3P97386 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Gm37105-201ENSMUST00000192251 2085 ntBASIC14.59□□□□□ -0.07
Lig3P97386 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.59□□□□□ -0.07
Lig3P97386 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.59□□□□□ -0.07
Lig3P97386 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Gm29127-201ENSMUST00000188304 517 ntBASIC14.59□□□□□ -0.07
Lig3P97386 Gm7287-201ENSMUST00000205267 602 ntBASIC14.59□□□□□ -0.07
Lig3P97386 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
Lig3P97386 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lig3P97386 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms