Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
RaraP11416 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RaraP11416 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RaraP11416 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
RaraP11416 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
RaraP11416 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RaraP11416 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RaraP11416 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RaraP11416 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RaraP11416 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RaraP11416 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
RaraP11416 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 AC159621.2-201ENSMUST00000223519 1326 ntBASIC14.45□□□□□ -0.1
RaraP11416 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
RaraP11416 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.45□□□□□ -0.1
RaraP11416 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
RaraP11416 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC14.45□□□□□ -0.1
RaraP11416 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
RaraP11416 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC14.45□□□□□ -0.1
RaraP11416 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Mir7221-201ENSMUST00000184009 72 ntBASIC14.45□□□□□ -0.1
RaraP11416 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.45□□□□□ -0.1
RaraP11416 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RaraP11416 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.45□□□□□ -0.1
RaraP11416 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
RaraP11416 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RaraP11416 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
RaraP11416 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Gm6263-201ENSMUST00000120029 1342 ntBASIC14.44□□□□□ -0.1
RaraP11416 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC14.44□□□□□ -0.1
RaraP11416 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 Gm21854-201ENSMUST00000179901 471 ntBASIC14.44□□□□□ -0.1
RaraP11416 Gm43094-201ENSMUST00000196549 921 ntBASIC14.44□□□□□ -0.1
RaraP11416 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 Gm17870-201ENSMUST00000219489 1174 ntBASIC14.44□□□□□ -0.1
RaraP11416 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.44□□□□□ -0.1
RaraP11416 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.44□□□□□ -0.1
RaraP11416 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RaraP11416 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC14.44□□□□□ -0.1
RaraP11416 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RaraP11416 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.44□□□□□ -0.1
RaraP11416 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC14.43□□□□□ -0.1
RaraP11416 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
RaraP11416 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RaraP11416 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.43□□□□□ -0.1
RaraP11416 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RaraP11416 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.43□□□□□ -0.1
RaraP11416 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RaraP11416 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
RaraP11416 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
RaraP11416 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RaraP11416 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RaraP11416 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RaraP11416 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RaraP11416 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RaraP11416 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
RaraP11416 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
RaraP11416 Mir874-201ENSMUST00000104769 76 ntBASIC14.43□□□□□ -0.1
RaraP11416 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
RaraP11416 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RaraP11416 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms