Protein–RNA interactions for Protein: O88704

Hcn1, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1, mousemouse

Predictions only

Length 910 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hcn1O88704 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.82□□□□□ -0.36
Hcn1O88704 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.82□□□□□ -0.36
Hcn1O88704 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Hcn1O88704 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hcn1O88704 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hcn1O88704 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hcn1O88704 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
Hcn1O88704 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hcn1O88704 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.82□□□□□ -0.36
Hcn1O88704 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Hcn1O88704 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hcn1O88704 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hcn1O88704 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hcn1O88704 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.81□□□□□ -0.36
Hcn1O88704 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.81□□□□□ -0.36
Hcn1O88704 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.81□□□□□ -0.36
Hcn1O88704 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.81□□□□□ -0.36
Hcn1O88704 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Hcn1O88704 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Hcn1O88704 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Hcn1O88704 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hcn1O88704 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Hcn1O88704 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Hcn1O88704 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Gm13385-201ENSMUST00000121089 220 ntBASIC12.8□□□□□ -0.36
Hcn1O88704 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Gm29741-201ENSMUST00000192667 421 ntBASIC12.8□□□□□ -0.36
Hcn1O88704 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.8□□□□□ -0.36
Hcn1O88704 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.8□□□□□ -0.36
Hcn1O88704 Gm17795-201ENSMUST00000214505 757 ntBASIC12.8□□□□□ -0.36
Hcn1O88704 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Hcn1O88704 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Hcn1O88704 Mir497b-201ENSMUST00000093601 125 ntBASIC12.8□□□□□ -0.36
Hcn1O88704 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC12.8□□□□□ -0.36
Hcn1O88704 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hcn1O88704 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hcn1O88704 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hcn1O88704 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hcn1O88704 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Hcn1O88704 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hcn1O88704 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms