Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Mup-ps23-201ENSMUST00000118063 630 ntBASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.11□□□□□ -0.47
Lmx1bO88609 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.11□□□□□ -0.47
Lmx1bO88609 AC121805.2-201ENSMUST00000218808 2538 ntBASIC12.11□□□□□ -0.47
Lmx1bO88609 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.1□□□□□ -0.47
Lmx1bO88609 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC12.1□□□□□ -0.47
Lmx1bO88609 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC12.1□□□□□ -0.47
Lmx1bO88609 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.1□□□□□ -0.47
Lmx1bO88609 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.1□□□□□ -0.47
Lmx1bO88609 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.1□□□□□ -0.47
Lmx1bO88609 AC140451.2-201ENSMUST00000228030 664 ntBASIC12.1□□□□□ -0.47
Lmx1bO88609 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.1□□□□□ -0.47
Lmx1bO88609 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.1□□□□□ -0.47
Lmx1bO88609 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC12.1□□□□□ -0.47
Lmx1bO88609 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lmx1bO88609 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Lmx1bO88609 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Lmx1bO88609 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gm13226-201ENSMUST00000117838 404 ntBASIC12.09□□□□□ -0.47
Lmx1bO88609 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
Lmx1bO88609 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gm43630-201ENSMUST00000201550 776 ntBASIC12.09□□□□□ -0.47
Lmx1bO88609 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.09□□□□□ -0.47
Lmx1bO88609 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.09□□□□□ -0.47
Lmx1bO88609 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lmx1bO88609 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms