Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Cops4O88544 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Cops4O88544 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC12.32□□□□□ -0.44
Cops4O88544 Gm37714-201ENSMUST00000194742 342 ntBASIC12.32□□□□□ -0.44
Cops4O88544 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC12.32□□□□□ -0.44
Cops4O88544 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.32□□□□□ -0.44
Cops4O88544 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Cops4O88544 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.32□□□□□ -0.44
Cops4O88544 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Cops4O88544 Pck2-205ENSMUST00000226352 2784 ntBASIC12.32□□□□□ -0.44
Cops4O88544 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.32□□□□□ -0.44
Cops4O88544 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 AC151895.1-201ENSMUST00000219025 1742 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Gm13015-201ENSMUST00000118674 204 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC12.31□□□□□ -0.44
Cops4O88544 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Gm24513-201ENSMUST00000174964 138 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Gm27397-201ENSMUST00000184997 107 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Gm44335-201ENSMUST00000196879 141 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Gm44297-201ENSMUST00000198304 141 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Gm44346-201ENSMUST00000198851 141 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 Gm45453-201ENSMUST00000211758 853 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12.31□□□□□ -0.44
Cops4O88544 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Cops4O88544 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Cops4O88544 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
Cops4O88544 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.31□□□□□ -0.44
Cops4O88544 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cops4O88544 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.3□□□□□ -0.44
Cops4O88544 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Cops4O88544 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Cops4O88544 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Mir874-201ENSMUST00000104769 76 ntBASIC12.3□□□□□ -0.44
Cops4O88544 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC12.3□□□□□ -0.44
Cops4O88544 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC12.3□□□□□ -0.44
Cops4O88544 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Cops4O88544 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC12.3□□□□□ -0.44
Cops4O88544 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cops4O88544 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms