Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
Pcdh1F7BJK1 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Pcdh1F7BJK1 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Pcdh1F7BJK1 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Pcdh1F7BJK1 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Pcdh1F7BJK1 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Pcdh1F7BJK1 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Gm15770-201ENSMUST00000117498 584 ntBASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Gm43575-201ENSMUST00000196420 516 ntBASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Gm7774-201ENSMUST00000200064 533 ntBASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Pcdh1F7BJK1 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Pcdh1F7BJK1 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Gm15693-201ENSMUST00000120470 637 ntBASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Gm8396-201ENSMUST00000057361 823 ntBASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.02□□□□□ -0.49
Pcdh1F7BJK1 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Pcdh1F7BJK1 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms