Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Mir1897-201ENSMUST00000122581 272 ntBASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Gm22175-201ENSMUST00000175007 78 ntBASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 AC156016.3-201ENSMUST00000228623 344 ntBASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Gm27618-201ENSMUST00000183671 60 ntBASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 AC149294.4-201ENSMUST00000227870 882 ntBASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Rbfox2-208ENSMUST00000227930 1218 ntBASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lima1Q9ERG0 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lima1Q9ERG0 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 AC137842.1-201ENSMUST00000227896 2064 ntBASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Gm44401-201ENSMUST00000204462 2375 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms