Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 CT030704.2-201ENSMUST00000228887 494 ntBASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Ddx28Q9CWT6 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gm8410-201ENSMUST00000117225 605 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gm2445-201ENSMUST00000182798 989 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gm6916-202ENSMUST00000205523 195 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gm18027-201ENSMUST00000218947 619 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 AC154767.3-201ENSMUST00000225150 1342 ntBASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ddx28Q9CWT6 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Gm37714-201ENSMUST00000194742 342 ntBASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Shd-206ENSMUST00000225145 998 ntBASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ddx28Q9CWT6 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms